Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Jul 22, 2022

• Note on not being able to maintain the code anymore

  andreas-wilm

  committed
  54281cd

  Copy full SHA for 54281cd

Commits on Jan 6, 2021

• Merge pull request #107 from bkille/approx

  Show description for 3ce3d3a
  andreas-wilm

  authored
  3ce3d3a

  Copy full SHA for 3ce3d3a

• Merge pull request #109 from morinlab/bcftools_pparallel

  Show description for 3ac8cec
  andreas-wilm

  authored
  3ac8cec

  Copy full SHA for 3ac8cec

Commits on Dec 24, 2020

• Added --approx-threshold option (off by default)

  

  Andreas Wilm

  committed
  007a8ba

  Copy full SHA for 007a8ba

Commits on Dec 23, 2020

• Added libgsl to build process and added Bonf corr to approx

  

  Andreas Wilm

  committed
  7a6577c

  Copy full SHA for 7a6577c

Commits on Dec 22, 2020

• Merge branch 'master' of https://github.com/CSB5/lofreq

  

  Andreas Wilm

  committed
  8966e95

  Copy full SHA for 8966e95

• Removed some asserts that will fail for valid reasons

  

  Andreas Wilm

  committed
  e55414f

  Copy full SHA for e55414f

Commits on Dec 21, 2020

• patch non-ACTG reference issue

  rdmorin

  committed
  babdcab

  Copy full SHA for babdcab

Commits on Dec 11, 2020

• Use static gsl library

  bkille

  committed
  d41f10d

  Copy full SHA for d41f10d

• change cutoffs

  bkille

  committed
  980f537

  Copy full SHA for 980f537

• add minimum n cutoff

  bkille

  committed
  ba49787

  Copy full SHA for ba49787

• add -O3

  bkille

  committed
  b2d2762

  Copy full SHA for b2d2762

Commits on Dec 4, 2020

• fix merging by using bcftools

  rdmorin

  committed
  1528ca8

  Copy full SHA for 1528ca8

Commits on Nov 29, 2020

• less changes

  bkille

  committed
  2a9f83e

  Copy full SHA for 2a9f83e

• remove rpath. User's will need to ensure that libopenblas.so.0 is in the LD_LIBRARY_PATH

  bkille

  committed
  ef128f4

  Copy full SHA for ef128f4

Commits on Oct 16, 2020

• approx benchmark

  bkille

  committed
  f6d1bee

  Copy full SHA for f6d1bee

• add flags for gsl

  bkille

  committed
  40fc133

  Copy full SHA for 40fc133

Commits on Jun 15, 2020

• Minor cleanup in README

  

  Andreas Wilm

  committed
  6ef81d7

  Copy full SHA for 6ef81d7

• version 2.1.5

  

  Andreas Wilm

  committed
  8fe42b0

  Copy full SHA for 8fe42b0

• Merge pull request #95 from jmarshall/info_key_compare

  Show description for 9ffbd58
  andreas-wilm

  authored
  9ffbd58

  Copy full SHA for 9ffbd58

Commits on Jun 12, 2020

• Fix vcf_var_has_info_key()'s key comparison

  Show description for d2111d5
  jmarshall

  committed
  d2111d5

  Copy full SHA for d2111d5

• Fixed a tiny just introduced vcf format bug (only relevant to CONSVAR)

  

  Andreas Wilm

  committed
  4e06c1c

  Copy full SHA for 4e06c1c

• Merge branch 'master' of https://github.com/CSB5/lofreq

  

  Andreas Wilm

  committed
  8206db2

  Copy full SHA for 8206db2

• Fixed vcf routines with undefined results

  Show description for 1e44677
  

  Andreas Wilm

  committed
  1e44677

  Copy full SHA for 1e44677

Commits on Jan 17, 2020

• Added some comments RE #80

  

  Andreas Wilm

  committed
  a4db88e

  Copy full SHA for a4db88e

Commits on Jan 4, 2020

• Added 2.1.4 dist files

  andreas-wilm

  committed
  e3af6ff

  Copy full SHA for e3af6ff

• Updated Changelog for 2.1.4

  andreas-wilm

  committed
  ca0bab0

  Copy full SHA for ca0bab0

• Version bump to 2.1.4

  andreas-wilm

  committed
  e693b29

  Copy full SHA for e693b29

Commits on Dec 19, 2019

• Merge pull request #86 from jmarshall/htslib

  Show description for 01cc9ed
  andreas-wilm

  authored
  01cc9ed

  Copy full SHA for 01cc9ed

• Minor fixes in parallel caller

  Show description for 4ef3d95
  andreas-wilm

  committed
  4ef3d95

  Copy full SHA for 4ef3d95

Commits on Dec 18, 2019

• Using AC_RANLIB instead of LT_INIT

  andreas-wilm

  committed
  86a6cbe

  Copy full SHA for 86a6cbe

Commits on Dec 17, 2019

• Building against a source HTSlib requires HTSlib 1.4 or later

  Show description for c8c1a3d
  jmarshall

  committed
  c8c1a3d

  Copy full SHA for c8c1a3d

Commits on Dec 16, 2019

• Update configure's HTSlib detection and remove Samtools detection

  Show description for 755f434
  jmarshall

  committed
  755f434

  Copy full SHA for 755f434

• Convert use of legacy samtools API to use HTSlib API instead

  Show description for daad606
  jmarshall

  committed
  daad606

  Copy full SHA for daad606

Commits on Mar 6, 2018

• Germline option in somatic only produced germline indels

  Show description for f2c00dc
  

  Andreas WILM

  committed
  f2c00dc

  Copy full SHA for f2c00dc

Pagination

Previous

Next