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Showing 1-20 of 34 results
  1. Article
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    The growing need for controlled data access models in clinical proteomics and metabolomics

    Thomas M. Keane, Claire O’Donovan, Juan Antonio Vizcaíno in Nature Communications
    01 October 2021 Open access
  2. Article

    The Federated European Genome–Phenome Archive as a global network for sharing human genomics data

    Teresa D’Altri, Mallory Ann Freeberg, ... Thomas M. Keane in Nature Genetics
    03 March 2025
  3. Article
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    Transcriptional activity and strain-specific history of mouse pseudogenes

    Pseudogenes are ideal markers of genome remodelling. In turn, the mouse is an ideal platform for studying them, particularly with the recent...

    Cristina Sisu, Paul Muir, ... Mark Gerstein in Nature Communications
    29 July 2020 Open access
  4. Article
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    Integration of genomics, metagenomics, and metabolomics to identify interplay between susceptibility alleles and microbiota in adenoma initiation

    Background

    Colorectal cancer (CRC) is a multifactorial disease resulting from both genetic predisposition and environmental factors including the gut...

    Jacob E. Moskowitz, Anthony G. Doran, ... James M. Amos-Landgraf in BMC Cancer
    29 June 2020 Open access
  5. Article

    Leveraging European infrastructures to access 1 million human genomes by 2022

    Human genomics is undergoing a step change from being a predominantly research-driven activity to one driven through health care as many countries in...

    Gary Saunders, Michael Baudis, ... Serena Scollen in Nature Reviews Genetics
    27 August 2019
  6. Article
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    Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Gary Saunders, Michael Baudis, ... Serena Scollen in Nature Reviews Genetics
    13 September 2019
  7. Article
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    A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity

    ZIC2 mutation is known to cause holoprosencephaly (HPE). A subset of ZIC2 HPE probands harbour cardiovascular and visceral anomalies suggestive of...

    Iain M. Dykes, Dorota Szumska, ... Shoumo Bhattacharya in Scientific Reports
    11 July 2018 Open access
  8. Article
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    Publisher Correction: Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans

    In the supplementary information PDF originally posted, there were discrepancies from the integrated supplementary information that appeared in the...

    Thomas Gstrein, Andrew Edwards, ... David A. Keays in Nature Neuroscience
    06 June 2018
  9. Article
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    De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

    Long-read sequencing technologies such as Pacific Biosciences and Oxford Nanopore MinION are capable of producing long sequencing reads with average...

    Francesca Giordano, Louise Aigrain, ... Zemin Ning in Scientific Reports
    21 June 2017 Open access
  10. Article

    Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans

    The formation of the vertebrate brain requires the generation, migration, differentiation and survival of neurons. Genetic mutations that perturb...

    Thomas Gstrein, Andrew Edwards, ... David A. Keays in Nature Neuroscience
    08 January 2018
  11. Article
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    Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

    We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains and find extensive strain-specific haplotype variation....

    Jingtao Lilue, Anthony G. Doran, ... Thomas M. Keane in Nature Genetics
    01 October 2018 Open access
  12. Article
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    Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

    Background

    The Mouse Genomes Project is an ongoing collaborative effort to sequence the genomes of the common laboratory mouse strains. In 2011, the...

    Anthony G. Doran, Kim Wong, ... Thomas M. Keane in Genome Biology
    01 August 2016 Open access
  13. Article

    Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells

    In model organisms, classical genetic screening via random mutagenesis provides key insights into the molecular bases of genetic interactions,...

    Josep V Forment, Mareike Herzog, ... Stephen P Jackson in Nature Chemical Biology
    31 October 2016
  14. Article

    The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes

    The Mouse Genomes Project was initiated in 2009 with the goal of using next-generation sequencing technologies to catalogue molecular variation in...

    David J. Adams, Anthony G. Doran, ... Thomas M. Keane in Mammalian Genome
    30 June 2015
  15. Article
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    RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus

    Background

    Aspergillus fumigatus produces a number of secondary metabolites, one of which, gliotoxin, has been shown to exhibit anti-fungal activity....

    Grainne O’Keeffe, Stephen Hammel, ... Sean Doyle in BMC Genomics
    14 October 2014 Open access
  16. Article

    The mutational landscapes of genetic and chemical models of Kras-driven lung cancer

    Next-generation sequencing of human tumours has refined our understanding of the mutational processes operative in cancer initiation and progression,...

    Peter M. K. Westcott, Kyle D. Halliwill, ... Allan Balmain in Nature
    02 November 2014
  17. Article
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    Go retro and get a GRIP

    Gene retrocopy insertions are a source of new genes and new gene functions, and can now be identified using paired-end whole genome sequencing data.

    Se...

    Kim Wong, David J Adams, Thomas M Keane in Genome Biology
    19 March 2013
  18. Article
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    A global reference for human genetic variation

    The 1000 Genomes Project set out to provide a comprehensive description of common human genetic variation by applying whole-genome sequencing to a...

    Adam Auton, Gonçalo R. Abecasis, ... Gonçalo R. Abecasis in Nature
    30 September 2015 Open access
  19. Article

    POT1 loss-of-function variants predispose to familial melanoma

    Deleterious germline variants in CDKN2A account for around 40% of familial melanoma cases 1 , and rare variants in CDK4 , BRCA2 , BAP1 and the promoter...

    Carla Daniela Robles-Espinoza, Mark Harland, ... David J Adams in Nature Genetics
    30 March 2014
  20. Article
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    Next-generation sequencing of experimental mouse strains

    Since the turn of the century the complete genome sequence of just one mouse strain, C57BL/6J, has been available. Knowing the sequence of this...

    Binnaz Yalcin, David J. Adams, ... Thomas M. Keane in Mammalian Genome
    07 July 2012 Open access
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