Starred repositories
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
A Julia package for single cell and spatial data analysis
Linear mixed model genome scans for many traits
Documentation with Documenter.jl and VitePress
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
PCA for hidden variable inference in QTL mapping: an R package and tutorial
Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data
Tool for integrative gene-based association analysis using GWAS summary stats
⚔️Find splicing-led, functional changes of the proteome.
Alignment-free genotyper for SNPs and short indels, implemented in Python.
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …
Flexible and efficient persistent homology computation.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
推荐系统入门教程，在线阅读地址：https://datawhalechina.github.io/fun-rec/